[HTML][HTML] 26S proteasomes and immunoproteasomes produce mainly N-extended versions of an antigenic peptide

P Cascio, C Hilton, AF Kisselev, KL Rock… - The EMBO …, 2001 - embopress.org
P Cascio, C Hilton, AF Kisselev, KL Rock, AL Goldberg
The EMBO journal, 2001embopress.org
Protein degradation by proteasomes is the source of most antigenic peptides presented on
MHC class I molecules. To determine whether proteasomes generate these peptides directly
or longer precursors, we developed new methods to measure the efficiency with which 26S
and 20S particles, during degradation of a protein, generate the presented epitope or
potential precursors. Breakdown of ovalbumin by the 26S and 20S proteasomes yielded the
immunodominant peptide SIINFEKL, but produced primarily variants containing 1–7 …
Protein degradation by proteasomes is the source of most antigenic peptides presented on MHC class I molecules. To determine whether proteasomes generate these peptides directly or longer precursors, we developed new methods to measure the efficiency with which 26S and 20S particles, during degradation of a protein, generate the presented epitope or potential precursors. Breakdown of ovalbumin by the 26S and 20S proteasomes yielded the immunodominant peptide SIINFEKL, but produced primarily variants containing 1–7 additional N-terminal residues. Only 6–8% of the times that ovalbumin molecules were digested was a SIINFEKL or an N-extended version produced. Surprisingly, immunoproteasomes which contain the interferon-γ-induced β-subunits and are more efficient in antigen presentation, produced no more SIINFEKL than proteasomes. However, the immunoproteasomes released 2–4 times more of certain N-extended versions. These observations show that the changes in cleavage specificity of immunoproteasomes influence not only the C-terminus, but also the N-terminus of potential antigenic peptides, and suggest that most MHC-presented peptides result from N-terminal trimming of larger proteasome products by aminopeptidases (eg the interferon-γ-induced enzyme leucine aminopeptidase).
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